Publication history

I cannot guarantee this page is up to date, but you may find me on ORCID, ResearchGate and Google Scholar which are current.  It is unlikely that there will be many more additions to this as I have been either in industry, or in a non-research management role since 2011.

generateF Buket Ü Basmanav, Laura Cau, Aylar Tafazzoli, Marie-Claire Méchin, Sabrina Wolf, Maria Teresa Romano, Frederic Valentin, Henning Wiegmann, Anne Huchenq, Rima Kandil, Natalie Garcia Bartels, Arzu Kilic, Susannah George, Damian J Ralser, Stefan Bergner, David JP Ferguson, Ana-Maria Oprisoreanu, Maria Wehner, Holger Thiele, Janine Altmüller, Peter Nürnberg, Daniel Swan, Darren Houniet, Aline Büchner, Lisa Weibel, Nicola Wagner, Ramon Grimalt, Anette Bygum, Guy Serre, Ulrike Blume-Peytavi, Eli Sprecher, Susanne Schoch, Vinzenz Oji, Henning Hamm, Paul Farrant, Michel Simon, Regina C Betz (2016) Mutations in Three Genes Encoding Proteins Involved in Hair Shaft Formation Cause Uncombable Hair Syndrome. American Journal of Human Genetics, Advanced online publication.

M Tofazzal Islam, Daniel Croll, Pierre Gladieux, Darren M Soanes, Antoine Persoons, Pallab Bhattacharjee, Md Shaid Hossain, Dipali Rani Gupta, Md Mahbubur Rahman, M Golam Mahboob, Nicola Cook, Moin U Salam, Musrat Zahan Surovy, Vanessa Bueno Sancho, João Leodato Nunes Maciel, Antonio NhaniJúnior, Vanina Lilián Castroagudín, Juliana T de Assis Reges, Paulo Cezar Ceresini, Sebastien Ravel, Ronny Kellner, Elisabeth Fournier, Didier Tharreau, Marc-Henri Lebrun, Bruce A McDonald, Timothy Stitt, Daniel Swan, Nicholas J Talbot, Diane GO Saunders, Joe Win, Sophien Kamoun (2016) Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. BMC Biology 14(1)

David J Barnes, Edward Hookway, Nick Athanasou, Takeshi Kashima, Udo Oppermann, Simon Hughes, Daniel Swan, Dietrich Lueerssen, John Anson, A Bassim Hassan (2016) A germline mutation of CDKN2A and a novel RPLP1-C19MC fusion detected in a rare melanotic neuroectodermal tumor of infancy: a case report. BMC Cancer 16(1)

Maha S Zaki, Raoul Heller, Michaela Thoenes, Gudrun Nürnberg, Gabi Stern‐Schneider, Peter Nürnberg, Srikanth Karnati, Daniel Swan, Ekram Fateen, Kerstin Nagel‐Wolfrum, Mostafa I Mostafa, Holger Thiele, Uwe Wolfrum, Eveline Baumgart‐Vogt, Hanno J Bolz
(2016) PEX6 is Expressed in Photoreceptor Cilia and Mutated in Deafblindness with Enamel Dysplasia and Microcephaly Human Mutation 37:2 170-174

Manuel Corpas, Willy Valdivia-Granda, Nazareth Torres, Bastian Greshake, Alain Coletta, Alexej Knaus, Andrew P Harrison, Mike Cariaso, Federico Moran, Fiona Nielsen, Daniel Swan, David Y Weiss Solís, Peter Krawitz, Frank Schacherer, Peter Schols, Huangming Yang, Pascal Borry, Gustavo Glusman, Peter N Robinson (2015) Crowdsourced direct-to-consumer genomic analysis of a family quartet BMC Genomics 16:1 910

Hanno Joern Bolz, Raoul Heller, Michaela Thoenes, Gudrun Nürnberg, Peter Nürnberg, Srikanth Karnati, Daniel Swan, Eveline Baumgart-Vogt, Maha Zaki (2015) PEX6 mutation causing deafblindness with enamel dysplasia and microcephaly Investigative Ophthalmology & Visual Science 56:7 5986-5986

JD Milner, TP Vogel, L Forbes, CA Ma, A Stray-Pedersen, JE Niemela, JJ Lyons, KR Engelhardt, Y Zhang, N Topcagic, ED Roberson, H Matthews, JW Verbsky, T Dasu, A Vargas-Hernandez, N Varghese, KL McClain, LB Karam, K Nahmod, G Makedonas, EM Mace, HS Sorte, G Perminow, VK Rao, MP O’Connell, S Price, HC Su, M Butrick, J McElwee, J Hughes, J Willet, D Swan, Y Xu, M Santibanez-Koref, V Slowik, DL Dinwiddie, CE Ciaccio, CJ Saunders, S Septer, SF Kingsmore, AJ White, AJ Cant, S Hambleton, MA Cooper (2014) Early-onset lymphoproliferation and autoimmunity caused by germline STAT3 gain-of-function mutations. Blood, doi: 

Ghada Abdel-SalamMichaela ThoenesHanan H AfifiFriederike Körber, Daniel SwanHanno Jörn Bolz (2014) The supposed tumor suppressor gene WWOX is mutated in an early lethal microcephaly syndrome with epilepsy, growth retardation and retinal degeneration. Orphanet Journal of Rare Diseases 01/2014; 9(1):12

Anabel Maciel-Dominguez, Daniel SwanDianne FordJohn Hesketh (2013) Selenium alters miRNA profile in an intestinal cell line: Evidence that miR-185 regulates expression of GPX2 and SEPSH2. Molecular Nutrition & Food Research 08/2013

Solaf M ElsayedRaoul HellerMichaela ThoenesMaha S Zaki, Daniel SwanEzzat ElsobkyChristine ZühlkeInga Ebermann,Gudrun NürnbergPeter NürnbergHanno J Bolz (2013) Autosomal dominant SCA5 and autosomal recessive infantile SCA are allelic conditions resulting from SPTBN2 mutations. European Journal of Human Genetics: EJHG 07/2013

Laura J IonsLuisa A WakelingHelen J BosomworthJoy Ej HardymanSuzanne M Escolme, Daniel C Swan, Ruth A Valentine,John C MathersDianne Ford (2012) Effects of Sirt1 on DNA methylation and expression of genes affected by dietary restriction. Age 11/2012

Eva HeinzTom A WilliamsSirintra NakjangChristophe J Noël, Daniel C SwanAlina V GoldbergSimon R HarrisThomas WeinmaierStephanie MarkertDörte BecherJörg BernhardtTal DaganChristian HackerJohn M LucocqThomas Schweder,Thomas RatteiNeil HallRobert P HirtT Martin Embley (2012) The Genome of the Obligate Intracellular Parasite Trachipleistophora hominis: New Insights into Microsporidian Genome Dynamics and Reductive Evolution. PLoS Pathogens 10/2012; 8(10):e1002979

Michael J BellColin S Gillespie, Daniel SwanPhillip Lord (2012) An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB. Bioinformatics 09/2012; 28(18):i562-i568

Lisa J ConeyworthKelly A JacksonJohn TysonHelen J BosomworthEline van der HagenGeorgia M HannOgo A Ogo, Daniel C SwanJohn C MathersRuth A ValentineDianne Ford (2012) Identification of the Human Zinc Transcriptional Regulatory Element (ZTRE): A palindromic protein-binding DNA sequence responsible for zinc-induced transcriptional repression. Journal of Biological Chemistry 08/2012; 287(43):36567-81.

Oliver SemlerLutz GarbesKatharina Keupp, Daniel Swan,Katharina ZimmermannJutta BeckerSandra IdenBrunhilde Wirth,Peer EyselFriederike KoerberEckhard SchoenauStefan K BohlanderBernd WollnikChristian Netzer (2012)  A mutation in the 5′-UTR of IFITM5 creates an in-frame start codon and causes autosomal-dominant osteogenesis imperfecta type V with hyperplastic callus. The American Journal of Human Genetics 08/2012; 91(2):349-57.

G. Glusman, M. Cariaso, R. Jimenez, D. Swan, B. Greshake, J. Bhak, D.W. Logan, M. Corpas (2012).  Low budget analysis of Direct-To-Consumer genomic testing familial data. F1000 Research 1:3

Y. Xu, M.J. Barter, D.C. Swan, K.S. Rankin, A.D. Rowan, M. Santibanez-Koref, J. Loughlin,D.A. Young (2012) Identification of the pathogenic pathways in osteoarthritic hip cartilage: commonality and discord between hip and knee OA Osteoarthritis and Cartilage – 04 July 2012 (10.1016/j.joca.2012.05.006) [PubMed]

Patience Cole-Ezea, Dan Swan, Daryl Shanley, John Hesketh (2012) Glutathione Peroxidase 4 has a major role in protecting mitochondria from oxidative damage and maintaining oxidative phosphorylation complexes in gut epithelial cells.  Free Radical Biology and Medicine http://dx.doi.org/10.1016/j.freeradbiomed.2012.05.029

Arthur G Pratt, Daniel C Swan, Sarah Richardson, Gillian Wilson, Catharien MU Hilkens, David A Young, John D Issacs (2012) A CD4 T cell gene signature for early rheumatoid arthritis implicates interleukin 6-mediated STAT3 signalling, particularly in anti-citrullinated peptide antibody-negative disease. Annals of the Rhumatic Diseases. First published online April 24th 2012. doi: 10.1136/annrheumdis-2011-200968.

Alexandra Groom, Catherine Potter, Daniel C Swan, Ghazaleh Fatemifar, David M Evans, Susan M Ring, Valerie Turcot, Mark S Pearce, Nicholas D Embleton, George Davey, Smith, John C Mathers, Caroline L Relton.  Postnatal Growth and DNA Methylation Are Associated With Differential Gene Expression of the TACSTD2 Gene and Childhood Fat MassDiabetes (impact factor: 8.51). 12/2011; DOI: 10.2337/db11-1039 [PubMed]

Bolser DM, Chibon PY, Palopoli N, Gong S, Jacob D, Angel VD, Swan D, Bassi S, González V, Suravajhala P, Hwang S, Romano P, Edwards R, Bishop B, Eargle J, Shtatland T, Provart NJ, Clements D, Renfro DP, Bhak D, Bhak J. MetaBase–the wiki-database of biological databases. Nucl. Acids Res. (2011) doi: 10.1093/nar/gkr1099

Parnell LD, Lindenbaum P, Shameer K, Dall’Olio GM, Swan DC, et al. BioStar: An Online Question & Answer Resource for the Bioinformatics Community. PLoS Comput Biol 7(10): e1002216. 2011 doi:10.1371/journal.pcbi.1002216

Browning AC, Halligan EP, Stewart EA, Swan DC, Dove R, Samaranayake GJ, Amoaku WM. Comparative gene expression profiling of human umbilical vein endothelial cells and ocular vascular endothelial cells. Br J Ophthalmol. 2011 Oct 25. PubMed

Werner A, Swan DWhat are natural antisense transcripts good for? Biochem Soc Trans. 2010 Aug 1;38(4):1144-9. PubMed

Daniels DJ, Clothier C, Swan DC, Saretzki G.  Immediate and gradual gene expression changes in telomerase over-expressing fibroblasts. Biochem Biophys Res Commun. 2010 Jul 15 PubMed

Varanasi SS, Olstad OK, Swan DC, Sanderson P, Gautvik VT, Reppe S, Francis RM, Gautvik KM, and Datta HK. Skeletal site-related variation in human trabecular bone transcriptome and signaling.PLoS One 2010 May 18; 5(5) PubMed

Andrews E, Armstrong M, Tugwood J, Swan D, Glaves P, Pirmohamed M, Aithal GP, Wright MC, Day CP, Daly AK (2010) A role for the pregnane X receptor in flucloxacillin-induced liver injury. Hepatology. 51: 1656-1664. PubMed

Ince RA, Petersen RS, Swan DC, Panzeri S. (2009) Python for information theoretic analysis of neural data. Front Neuroinformatics. 3: 4. Pubmed

Mark Carlile, Daniel Swan, Kelly Jackson, Keziah Preston-Fayers, Benoit Ballester, Paul Flicek and Andreas Werner (2009) Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues Nucleic Acids Research, February 23, doi:10.1093/nar/gkp088 Pubmed

M Hong, K R Ryan, P D Arkwright, A R Gennery, C Costigan, M Dominguez, D W Denning, V McConnell, A J Cant, M Abinun, G P Spickett, D C Swan, C S Gillespie, D A Young, D Lilic (2009) Pattern recognition receptor expression is not impaired in patients with chronic mucocutanous candidiasis with or without autoimmune polyendocrinopathy candidiasis ectodermal dystrophy. Clinical and experimental immunology (22 January) Pubmed

Werner A, Carlile M, Swan D. (2009) What do natural antisense transcripts regulate?RNA Biol. 2;6(1) Pubmed

Jackson KA, Valentine RA, McKay JA, Swan DC, Mathers JC, Ford D. (2008) Analysis of differential gene-regulatory responses to zinc in human intestinal and placental cell lines. Br J Nutr. : 1-10. Pubmed

Greenall A, Lei G, Swan DC, James K, Wang L, Peters H, Wipat A, Wilkinson DJ, Lydall D. (2008) A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD+ biosynthetic gene BNA2 in chromosome end protection. Genome Biol. 9: R146. Pubmed

Waterhouse JC, Swan DC, Russell RR. (2007) Comparative genome hybridization of Streptococcus mutans strains. Oral Microbiol Immunol. 22: 103-110. PubMed

Field D, Tiwari B, Booth T, Houten S, Swan D, Bertrand N, Thurston M. (2006) Open software for biologists: from famine to feast. Nat Biotechnol. 24: 801-803. Pubmed

Allotey RA, Mohan V, McDermott MF, Deepa R, Premalatha G, Hassan Z, Cassell PG, North BV, Vaxillaire M, Mein CA, Swan DC, O’Grady E, Ramachandran A, Snehalatha C, Sinnot PJ, Hemmatpour SK, Froguel P, and Hitman GA. The EIF2AK3 gene region and type I diabetes in subjects from South India. Genes Immun 2004 Dec; 5(8) 648-52.doi:10.1038/sj.gene.6364139 pmid:15483661. PubMed

Aganna E, Martinon F, Hawkins PN, Ross JB, Swan DC, Booth DR, Lachmann HJ, Bybee A, Gaudet R, Woo P, Feighery C, Cotter FE, Thome M, Hitman GA, Tschopp J, and McDermott MF. Association of mutations in the NALP3/CIAS1/PYPAF1 gene with a broad phenotype including recurrent fever, cold sensitivity, sensorineural deafness, and AA amyloidosis. Arthritis Rheum 2002 Sep; 46(9) 2445-52. doi:10.1002/art.10509 pmid:12355493. PubMed

Korbonits M, Gueorguiev M, O’Grady E, Lecoeur C, Swan DC, Mein CA, Weill J, Grossman AB, and Froguel P. A variation in the ghrelin gene increases weight and decreases insulin secretion in tall, obese children. J Clin Endocrinol Metab 2002 Aug; 87(8) 4005-8. pmid:12161552. PubMed

Merry CL, Bullock SL, Swan DC, Backen AC, Lyon M, Beddington RS, Wilson VA, and Gallagher JT. The molecular phenotype of heparan sulfate in the Hs2st-/- mutant mouse. J Biol Chem 2001 Sep 21; 276(38) 35429-34. doi:10.1074/jbc.M100379200 pmid:11457822. PubMed

Episkopou V, Arkell R, Timmons PM, Walsh JJ, Andrew RL, and Swan DInduction of the mammalian node requires Arkadia function in the extraembryonic lineages.Nature 2001 Apr 12; 410(6830) 825-30. doi:10.1038/35071095 pmid:11298452.PubMed

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